I have three stackers that auto-placed their extensions but cannot build them due to the error message: "Cannot build: Collision with Stacker tower extension."
Removing and re-placing the extension results in a successful build.
I've rarely seen a blueprint that I could place but then had collision with something. The only other time was pretty recently while I was blueprinting a bridge.

Here's a save at the location of the above screenshot.
The bridge section I mentioned is also in the same save, at the bottom of the crater.


